File Exchange > Graphing >    Phylogenetic Tree

Author:
OriginLab Technical Support
Date Added:
3/21/2018
Downloads (90 Days):
173
Last Update:
5/14/2018
Total Ratings:
0
File Size:
158 KB
Average Rating:
File Name:
PhylogeneticTree.opx
File Version:
1
Minimum Versions:
2018b
License:
Free
Summary:

Plot phylogenetic tree, swap subtrees and reroot tree from a node.

Screen Shot and Video:
Description:

Purpose
This app imports phylogenetic tree and plot it as retangular phylogram. Clicking a node marker on the graph can swap subtrees below the node or reroot the tree from it.

Installation
Download the file, then drag-and-drop onto the Origin workspace. An icon will appear in the Apps gallery window.

Operation

  1. Click the icon in the Apps Gallery window to open the toolbar.
  2. Click Plot Phylogenetic Tree button to open a browse dialog. Select a data file (*.dnd, *.ph, or *.txt) and click OK.
  3. Activate the graph page. Click Toggle Swap Markers button to show node markers on the graph. Click a node marker to swap braches below it.
  4. Click Toggle Reroot Markers button and click a node marker to reroot the tree from it.

Sample OPJU File
This app provides a sample OPJU file and a data file. Right click on the app icon in the Apps Gallery window, and choose Show Samples Folder from the short-cut menu. A folder will open. Drag-and-drop the project file PhylogeneticTreeSample.opju from the folder onto Origin. The Notes window in the project shows detailed steps.
Note: If you wish to save the OPJU after changing, it is recommended that you save to a different folder location (e.g. User Files Folder).

Updates:

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